PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593001.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 373aa MW: 42318.1 Da PI: 6.3248

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	88	124	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ rr+++NReAAr+sR+RKka++++Le+ +L + XP_009593001.1 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQL 124 789*************************865555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-7	82	133	No hit	No description
SMART	SM00338	0.0018	84	137	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	86	130	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	88	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-6	88	129	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-29	175	249	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNSSTYTQFA ASRRMGICDP IHQLGMWDDF NSSFPSTSAT MILEVDKCLE DQIPIMEKRL 60 DNETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELER ARKQGMCVGG GLDASQLSYS GTASSGTAVF DMEYGHWVEE QTRQTNDLRI 180 ALHSQIGEAE LRNIVDGYLN HYFDLFRMKA TAAKADVLYI MSGMWKTSAE RFFMWIGGFR 240 PSELLKVLTP HLELLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG 300 NYTLPQMGPA IEKLEDLVRF VNQADHLRQE TLQQMSRILN TCQAAQGLLA LGEYFERLRV 360 LSSQWATRLR EPT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNSSTYTQFA ASRRMGICDP IHQLGMWDDF NSSFPSTSAT MILEVDKCLE DQIPIMEKRL  60
DNETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELER ARKQGMCVGG GLDASQLSYS GTASSGTAVF DMEYGHWVEE QTRQTNDLRI  180
ALHSQIGEAE LRNIVDGYLN HYFDLFRMKA TAAKADVLYI MSGMWKTSAE RFFMWIGGFR  240
PSELLKVLTP HLELLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG  300
NYTLPQMGPA IEKLEDLVRF VNQADHLRQE TLQQMSRILN TCQAAQGLLA LGEYFERLRV  360
LSSQWATRLR EPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X16449	0.0	X16449.1 Tobacco mRNA for TGA1a DNA-binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593001.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1S3Y461	0.0	A0A1S3Y461_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
STRING	XP_009593001.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-159	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]