PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 23092.7 Da PI: 7.2177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8.1e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde lv +++lG ++W++ a+ g++R++k+c++rw++yl XP_009592989.1 8 RGQWLEEEDESLVMIIAMLGERRWDALAKASGLRRSGKSCRLRWLNYL 55 899*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 64 | 106 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l XP_009592989.1 64 ITADEEHLIIQLQKQFGNK-WSKIAEQLP-GRTDNEIKNYWRSHL 106 59*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.47 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-26 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.39E-8 | 11 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.037 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-10 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MHQDELRRGQ WLEEEDESLV MIIAMLGERR WDALAKASGL RRSGKSCRLR WLNYLRPNLK 60 HGHITADEEH LIIQLQKQFG NKWSKIAEQL PGRTDNEIKN YWRSHLRKKA LKYEQESFGS 120 NTSNSEQQSS TLKSDTVPSS HSDDYFSGKG DCSSAYSLAY SSNDTTLLDW IPSWSYEQSR 180 MEHHMYFCSS NLCFCYPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-25 | 5 | 110 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-25 | 5 | 110 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592988.1 | 1e-148 | PREDICTED: myb-related protein MYBAS1-like | ||||
Refseq | XP_018624159.1 | 1e-148 | PREDICTED: myb-related protein MYBAS1-like | ||||
Refseq | XP_018624160.1 | 1e-148 | PREDICTED: myb-related protein MYBAS1-like | ||||
Swissprot | Q9SCP1 | 3e-49 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1S4D661 | 1e-141 | A0A1S4D661_TOBAC; myb-related protein MYBAS1-like isoform X1 | ||||
STRING | XP_009592986.1 | 1e-147 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 4e-51 | myb domain protein 27 |
Publications ? help Back to Top | |||
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