PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 346aa MW: 39324.6 Da PI: 8.7527 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 135.9 | 3.4e-42 | 103 | 244 | 2 | 131 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.....eaesssssasn 84 a kkdrhski T+ g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k ai el+++ +ss+ sec +es ++ + XP_009592171.1 103 AYKKDRHSKINTAHGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSAINELVQStatgaisTSSTTSECevisgIDESTTTNDIQ 197 679*************************************************************8887776444446776665433333333334 PP TCP 85 sssgkaaksaakskksqksaasalnlakesrakarararertrekmr 131 ++ ++++ ++k+ ++ ++ a+++ +akesr++arararert+ k++ XP_009592171.1 198 KQPNRSEVGEKKKANKLARRAAFNPVAKESRKQARARARERTKIKKS 244 444477777777777777788899999***************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 35.634 | 105 | 163 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.4E-44 | 105 | 243 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.477 | 225 | 242 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MYPSSNICNY NPNISSSNNF FHIPSPNSMQ YEHELFQYFH DHHLLQPQQQ QQLLLTTPDH 60 YMAADSNKDT VIRSTINQLE GPKEVELQGS FKNKNGANKR AVAYKKDRHS KINTAHGPRD 120 RRMRLSLDVA RKFFNLQDLL GFDKASKTVE WLLTKSKSAI NELVQSTATG AISTSSTTSE 180 CEVISGIDES TTTNDIQKQP NRSEVGEKKK ANKLARRAAF NPVAKESRKQ ARARARERTK 240 IKKSLLNIGD QSMAADDLKR LGCWSPFETG EESGIQGYST NHQVEDQHTT NHEEHLLGTK 300 ENADGSNLVV TGNWNPFTVF NYHHNTEISH EHQFTNFQFS GKFWEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ194953 | 1e-180 | FJ194953.1 Nicotiana tabacum TCP1 protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592171.1 | 0.0 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A1S4D053 | 0.0 | A0A1S4D053_TOBAC; transcription factor DICHOTOMA-like | ||||
STRING | XP_009592164.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 8e-27 | TCP domain protein 12 |