PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591884.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 959aa    MW: 103432 Da    PI: 6.7904
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR482.4e-15540577340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkkskClk+YC+Cfaag +C+ +C C++C+N+ 
  XP_009591884.1 540 CKRCNCKKSKCLKLYCDCFAAGIYCAGSCACQGCFNRL 577
                     79**********************************86 PP
2TCR48.51.7e-15627665139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gC+Ckks ClkkYCeC++a++ Cs+ C+Ce+CkN 
  XP_009591884.1 627 RHKRGCSCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 665
                     589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.5E-15538579IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.793539667IPR005172CRC domain
PfamPF036383.0E-11541576IPR005172CRC domain
SMARTSM011145.5E-17627668IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-11629664IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MDSPEPSSKT ATINSTINPT PTEDSPVFSY ISNLSPIQPV KAAPVVQGFP GLNSPPLLFT  60
SPRVSAHSRL RRSQFPQLSS EAFSGKNDDY NNAITDSDGN GVSASQLRSE LSPSIQKVSD  120
NNISVPDESG SLIRCVDEFL VDVSNSESAN PSNSTHPSPK VADNIPQSPN SAAESVADFA  180
SKDARKDEIP KDAARVVVEQ AEEENKGKSS SDQKDNGIYS TSTDSDLPSL NSCTKIEPDL  240
LADNSLHYHY SGRQMAQLSR ADHAMLDDAS DIQNEPLETA HDCRNDNDKI NSMSSAPDEC  300
IMQHDSQTKA GQHQSGIRRR CLQFEDAQRK ISPTSLGLQN ASGVVSCSIP PVSPAVIEVV  360
ASVSSNRSST ASNRPSTQLT SSSDNFESLA VKVPKPSGIG LHLNSIAMQA GSRATVSVKS  420
AERGNLSLHE KKLTSMMSCH PSENLKSCSI SSNVVGSHLT SGNYDGEHES YGTNAQSAAS  480
LHLNDAKPLN NTVLLKPTEH TISHKRKASA EYIDSPMDYN QSSPKKKRKK PSDGYDGDGC  540
KRCNCKKSKC LKLYCDCFAA GIYCAGSCAC QGCFNRLEYE DTVNDVRQQI QSRNPLAFCP  600
KIVQHPTDSP ANILGAEGAS FTPPSARHKR GCSCKKSMCL KKYCECYQAN VGCSSGCRCE  660
GCKNVYGLKE EYGKDLVKKH CITERLEKSV EEKVEMVTAT SGLLQIDQRN QCNLTPPTPS  720
FQCSNHGKNA SKSWFTSGRY LSSPESGQAI YGLSPASPTN SKNHDIDQET TGDIMDLVTF  780
DQEFNYSNAK LANEFSPGFH VTGNTDDLLA LPKSQDLASN TGGQLIPQTV HFQSTWPLSW  840
RDSPITPMNQ FDGSGMNALE LLNSDKKPYA MADDTPEILK DSSMPQTGVK VSSPNKKRIS  900
PPNRHLNELG SSSSGGGLKT GRKFILRAVP SFPPLTPCTD SKDAAAHSMD NSQKGSSGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1954366514121Protein lin-54 homolog
5fd3_B3e-1954366514121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1523530PKKKRKKP
2525529KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591884.10.0PREDICTED: CRC domain-containing protein TSO1-like
TrEMBLA0A1S3X6C70.0A0A1S3X6C7_TOBAC; CRC domain-containing protein TSO1-like
STRINGXP_009591884.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-53Tesmin/TSO1-like CXC domain-containing protein