PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009591799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 20015.3 Da PI: 5.1797 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 42.2 | 1.6e-13 | 1 | 39 | 23 | 58 |
EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +YYrCt++ +Cp+kk+v+r ++dp v+e+tY+++H++ XP_009591799.1 1 AYYRCTHQklyNCPAKKQVQRLDDDPYVFEVTYRSQHTC 39 6*******999**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 10.866 | 1 | 37 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-11 | 1 | 40 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-8 | 1 | 41 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-12 | 2 | 39 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-11 | 2 | 41 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
AYYRCTHQKL YNCPAKKQVQ RLDDDPYVFE VTYRSQHTCY MSATAPTVPP PSVEEITRQT 60 TTTLPPYLPL PPPTSASLSA HWLSMDIKPQ RDQGTSTIPF DIQRDFGHST GGSLASICNM 120 VSTGGGSAGP SGGRYGREVD YQLPVVDMAD AMFNFSGSSS NNSMDIIFSS IDDKWDSAEK 180 KE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-96 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448796.1 | 1e-133 | PREDICTED: WRKY transcription factor 55-like | ||||
TrEMBL | A0A1S3Y8X6 | 1e-132 | A0A1S3Y8X6_TOBAC; WRKY transcription factor 55-like | ||||
STRING | XP_009591799.1 | 1e-134 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9280 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40740.2 | 9e-24 | WRKY DNA-binding protein 55 |