PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009591627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 609aa MW: 65899.7 Da PI: 6.8368 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.9e-31 | 254 | 311 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers +++++ei+Y+g+H+h+k XP_009591627.1 254 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 311 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.1 | 1.8e-33 | 425 | 483 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_009591627.1 425 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 483 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-26 | 244 | 312 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.435 | 248 | 312 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 250 | 312 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-33 | 253 | 311 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-24 | 254 | 310 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-37 | 410 | 485 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 417 | 485 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 420 | 485 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 425 | 484 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-26 | 426 | 483 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MEDSQSQSQS HYSQQYSHSS PLPSINESSE QQLKISSSDA SAVGSNSSRG AKYKLMSPAK 60 LPISRSACIT IPPGLSPSSF LESPVLLSNI KAEPSPTTGS FSKFQLMQGS SGSAALSFMR 120 SCSSGNAYGE TTGEFEFKFA IGSSSTSGSL AKEAATFAGL NQQQSEPLNQ IQDRYLFQSF 180 APSALVRSEM PNSKEVSLPA PVSLDASSIS TAAADAAAID NEEISQRGHS NPSSQGSHAD 240 NRDVSSITAE RSSDDGYNWR KYGQKLVKGS EFPRSYYKCT YPNCEVKKIF ERSPEGQITE 300 IVYKGSHDHP KPQPSRRFTP GALTSIQEDR SEKEASFTGQ EDKFNTNAYT SNIEPSSTPV 360 SPRLAEDDGL EGTVSQLQSA NDQLDEDDPF AKRRKMDGGM DITPVVKPIR EPRVVVQTVS 420 EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK AVITTYEGKH 480 NHDVPTARNH SHEMAGSAPV TGSSRVRAEE NGSISLDLGV GIGYGMENRS NGQLHTRPAE 540 NVRNQVQVSS SSMMVVQPGA VAACYGIVNG GMSRFGSIDN RIQGTGFESL PLQPSTQCPQ 600 NYGRIILGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-37 | 254 | 485 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-37 | 254 | 485 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711131 | 0.0 | AB711131.1 Nicotiana benthamiana NbWRKY10 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591627.1 | 0.0 | PREDICTED: probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 1e-155 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A1U7XWK3 | 0.0 | A0A1U7XWK3_NICSY; probable WRKY transcription factor 20 isoform X1 | ||||
STRING | XP_009591627.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4025 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-151 | WRKY family protein |