PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009591015.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 229aa MW: 26287.1 Da PI: 7.0594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009591015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	7.9e-08	16	64	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 + +E++RR+++++ +++L +ll + a +sk l + A++YIksL+ XP_009591015.1 16 KYVEKNRRNNMKNLYNQLHSLLLNhA---SSKEtLALPDRIDAATNYIKSLE 64 568*******************66...66667*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.004	10	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-9	12	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-6	14	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.31E-4	18	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MESGLRSNSA PKLERKYVEK NRRNNMKNLY NQLHSLLLNH ASSKETLALP DRIDAATNYI 60 KSLETKLEKN KMYLEELRIS CRKRHRSVKA TNELPSSSTK SLPQIEFHEM SPTMFVVLIT 120 GLDNLAIFYN IIRLLNEEGV EVLYSSFSLN GNSTLQISLE TKMDRNSTME FRAATLFDKL 180 KELLYGSSCS NNMESQLHLW DYIIESELLG FDALELLPIA SQNPALQYN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591015.1	1e-167	PREDICTED: uncharacterized protein LOC104088099
TrEMBL	A0A1U7YT30	1e-119	A0A1U7YT30_NICSY; transcription factor bHLH120-like
STRING	XP_009591015.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-22	bHLH family protein