PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590760.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 581aa    MW: 66928 Da    PI: 7.3156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-141694999
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k++ l +pk f+ ++ +g ++e     +  +  + W vk+  +     y +++GW eFv++n+L+ gD++vF+++g++ef   v++f++
  XP_009590760.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRKVDKYWLVKV--ND----YRFKAGWAEFVEENDLQLGDMLVFRYEGNMEF--EVMIFDS 94
                    456666.********.554666544...56667789*******..55....55**************************9999..8999886 PP
2B351.42e-16194275590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++++ l+ g ++lp +fa+    ++ ++ +l+++de+ r W++kl+ + + +r+ +++GW++F  +n+LkegD +vF+++ ++e+
  XP_009590760.1 194 TIKPYCLTYGYMYLPQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDCNNRVRIGDGWRKFIVDNRLKEGDHIVFEVVTDEET 275
                     578999999*********9444..43.3348***************5.66667799***********************8876544 PP
3B346.66.3e-15349430590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++++ l+ g l+l  +fa+    ++ ++ +l+++de+ r W++kl+ + +++r+ +++GW +F  +n+LkegD +vF+++ ++e+
  XP_009590760.1 349 TIKPYCLTYGYLYLAQQFANGL--SN-KKCDLIIRDERQRLWNLKLS-SDYKNRVRIGDGWCKFIADNRLKEGDRIVFEVVTDEET 430
                     578899999*********9444..43.3348***************5.777889*************************8876554 PP
4B351.32.1e-16487574595
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     +++ ++ +++r+ +pk fa+e+g+++++  t+ ++d++ rs e++l y+ + g++++++ W++F+ an LkegD ++F+    +++++ +k
  XP_009590760.1 487 TVKLHHISKCRMHVPKLFARENGLSNRK-CTIAIRDSEQRSLEFRL-YSSSAGSTFIGGEWRKFCAANFLKEGDRIMFEIFA-KGEKPILK 574
                     4578999***************999765.5****************.9999999*************************544.66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-21497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.661795IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-19797IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-15893No hitNo description
SMARTSM010193.5E-131095IPR003340B3 DNA binding domain
PfamPF023628.8E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-18188280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-18188280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084190286IPR003340B3 DNA binding domain
SMARTSM010193.1E-13191283IPR003340B3 DNA binding domain
PfamPF023628.6E-15194275IPR003340B3 DNA binding domain
CDDcd100178.91E-14195268No hitNo description
Gene3DG3DSA:2.40.330.106.1E-16343435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-15343435IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632345441IPR003340B3 DNA binding domain
SMARTSM010191.1E-7346438IPR003340B3 DNA binding domain
PfamPF023621.8E-12349430IPR003340B3 DNA binding domain
CDDcd100177.49E-10350423No hitNo description
Gene3DG3DSA:2.40.330.101.7E-15480573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15483575IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.419483578IPR003340B3 DNA binding domain
SMARTSM010192.3E-9484579IPR003340B3 DNA binding domain
PfamPF023628.3E-15487575IPR003340B3 DNA binding domain
CDDcd100171.64E-13491576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKVRPVKPQF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRKVDKYWL VKVNDYRFKA  60
GWAEFVEEND LQLGDMLVFR YEGNMEFEVM IFDSSHCNRE YAEYLQEEEA AATHTFGEAS  120
KNFEFEDTNN YASIPSGDRL YQSSPSTSCY LSHSRNTDDV IEIPSPGIKL SDEDSSRAEA  180
ATDKHVGHSH FVCTIKPYCL TYGYMYLPQQ FANGLSNKKC DLIIRDERQR LWNLKLSSDC  240
NNRVRIGDGW RKFIVDNRLK EGDHIVFEVV TDEETSIWKF HVVTTAETPM RKFQGGHGFE  300
AWKQPLAEIP SPDDVIEIPS PCIKSSDEDF SHAEAATDKH VGHSHFVCTI KPYCLTYGYL  360
YLAQQFANGL SNKKCDLIIR DERQRLWNLK LSSDYKNRVR IGDGWCKFIA DNRLKEGDRI  420
VFEVVTDEET SIWKFHAVTN AETPMRKFQA NATEKPEPNI MSSYKAFPDV EAAKDMPLSR  480
PDHFISTVKL HHISKCRMHV PKLFARENGL SNRKCTIAIR DSEQRSLEFR LYSSSAGSTF  540
IGGEWRKFCA ANFLKEGDRI MFEIFAKGEK PILKFYGLGI G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590760.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X4
TrEMBLA0A1S3WXK50.0A0A1S3WXK5_TOBAC; B3 domain-containing protein REM17-like isoform X3
STRINGXP_009590757.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.15e-39B3 family protein