PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009590001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 465aa MW: 51126.1 Da PI: 8.2931 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 9.2e-12 | 108 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g XP_009590001.1 108 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 164 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.4 | 4.7e-15 | 207 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_009590001.1 207 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 258 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.14E-13 | 108 | 172 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-9 | 108 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.48E-17 | 108 | 174 | No hit | No description |
SMART | SM00380 | 8.2E-21 | 109 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-10 | 109 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.687 | 109 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 110 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-18 | 207 | 268 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-10 | 207 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-25 | 207 | 268 | No hit | No description |
SMART | SM00380 | 7.9E-34 | 208 | 272 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 208 | 266 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 208 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 248 | 268 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MDMDSSSENW LGFSLSNINS NNSNANNNSS INLPSNNASE LCLFQAFNSN PNSGVEENGK 60 CTDELKTIAA SFLRSFSADQ NNSQNKQLAV VALPPAKKSV ETFGQRTSIY RGVTRHRWTG 120 RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL KYWGPTTTTN SPVLNYEKEL 180 EEMKSMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 240 TQEEAAEAYD IAAIKFRGLN AVTNFDISRY DVKSIASSNL PVGGMNNKSK TSSESAASES 300 SKNVQGNRSD DRDISSATSA PLISSQAPNM VNLGFGLPIK QDASDFWSIL GYTNDQNNGS 360 KNPSANATFF HGPPIQAQGT TLFRMDLPAT TTSLNEVNSN QVIFNEEGYY HQQQQSGSCS 420 TITSVPSDTT TTLDGSNFGN WMPPSLHSFQ TTAKNPFQTP IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590001.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Refseq | XP_016485715.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-137 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1S4B9X6 | 0.0 | A0A1S4B9X6_TOBAC; AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
STRING | XP_009590000.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-128 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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