PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009588931.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 300aa MW: 33511.3 Da PI: 6.2254

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009588931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.7e-39	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+h+lFG+sn+lk+lk+l++++++ am+s++y+A+ar + PvyG+v+ i++l +++ ++el+ XP_009588931.1 10 ACAACKYQRRRCTSDCPLAPYFPADQPKMFQNAHRLFGVSNILKILKQLDPSQKKVAMKSIIYQANARDKHPVYGCVAEIQNLVFHIQLYEEELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_009588931.1 105 AVHAQL 110 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.624	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-38	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTLKGGTSQA CAACKYQRRR CTSDCPLAPY FPADQPKMFQ NAHRLFGVSN ILKILKQLDP 60 SQKKVAMKSI IYQANARDKH PVYGCVAEIQ NLVFHIQLYE EELQAVHAQL AFYRQQHQQQ 120 EISSTALSDS VSQIQLGMPP PPPPPPQPAN GNGLTLFHQD APSQQYNALP VQSYPSYSNN 180 SYAAYNNNTT FVDPKDNNAV NSLWIQQSYG NRACNNNTMI MQSQLPASQA ISVPPEVTQD 240 YDEIHPFFDT IDDRQSYIDS KEAYDSSSES SLKDTRHSVE HVAENELKSA AACFTLTSVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-29	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-29	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588931.1	0.0	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1S4B091	0.0	A0A1S4B091_TOBAC; LOB domain-containing protein 27-like
STRING	XP_009588931.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-52	LOB domain-containing protein 27