PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587235.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 385aa    MW: 43228.2 Da    PI: 7.4955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY742e-23126185258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK++ g+++pr YYrC+ +   +C ++k v+rs+++p v+e++Y ++H +
  XP_009587235.1 126 EDGYSWRKYGQKHILGANYPREYYRCARRhlsKCIATKMVKRSDTEPPVFEVIYGESHSC 185
                     7**************************98889**************************98 PP
2AP247.64.1e-15324372255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIr+p     + +r++lg+f    +Aa a++aa+ +++g
  XP_009587235.1 324 TYRGVRQRP-WGKWAAEIREP-----NrARVWLGSFENSHDAAVAYDAAAYRFYG 372
                     69*******.**********8.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-23113187IPR003657WRKY domain
PROSITE profilePS5081118.131120184IPR003657WRKY domain
SuperFamilySSF1182903.27E-21123187IPR003657WRKY domain
SMARTSM007741.7E-27125187IPR003657WRKY domain
PfamPF031064.1E-22126185IPR003657WRKY domain
CDDcd000181.87E-19323381No hitNo description
Gene3DG3DSA:3.30.730.102.5E-28324381IPR001471AP2/ERF domain
SMARTSM003804.9E-30324385IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-19324381IPR016177DNA-binding domain
PfamPF008472.5E-9324372IPR001471AP2/ERF domain
PROSITE profilePS5103223.288324380IPR001471AP2/ERF domain
PRINTSPR003673.1E-12325336IPR001471AP2/ERF domain
PRINTSPR003673.1E-12362382IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSVMSKGKQI INSAPSSSTA KLVSPHLPVD SSTKSSDRPS NSRKRKMISR RTEYVHARSG  120
AEVPPEDGYS WRKYGQKHIL GANYPREYYR CARRHLSKCI ATKMVKRSDT EPPVFEVIYG  180
ESHSCGQESK NQNEELPEPV LTTEIQSESA DIADMVSTPN NSFNNSSTGV VFSSNSNSNS  240
LFNIANSDFI STPTSSPHPD WNFLSFDDTT RLTALLNDGP ENVSCTYKGV DFISTPTSDH  300
NLLLDDTTSL TTLSKSAPEN ARCTYRGVRQ RPWGKWAAEI REPNRARVWL GSFENSHDAA  360
VAYDAAAYRF YGKNARLNFP ERYIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22325382362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587235.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_018622456.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
TrEMBLA0A1S4CCL80.0A0A1S4CCL8_TOBAC; probable WRKY transcription factor 41 isoform X1
STRINGXP_009587235.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-30WRKY family protein