PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 39723.4 Da PI: 7.6078 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.7 | 2.4e-09 | 189 | 236 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++sLq XP_009587187.1 189 SHSLAERVRREKISERMKILQSIVPGC----DKVTGKALMLDEIINYVQSLQ 236 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-17 | 183 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.08E-10 | 183 | 240 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 185 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.51 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 189 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-10 | 191 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAAFSYQLQH TNPFLLDSVF LPSSPIKMSG FLEEQNNSIV QNCFTQFYQP ESFQQLPTAN 60 VIVHESSYCL DQSTNVTLGQ NEPNSVTNNS SSSVSLDMDS SSVTDKIESR NKPNFTPMDK 120 KRKSREGSSS MSSAHSKNVK QVDHGKKKKS NSQSVAKEEK KGKEEKKANE EAPTGYIHVR 180 ARRGQATDSH SLAERVRREK ISERMKILQS IVPGCDKVTG KALMLDEIIN YVQSLQNQVE 240 FLSMKLASLN PMYYDFGMDL DALMVRPDQS LSGLGTPLPN MQQASPTNIT SQAAEVIPNI 300 NNSGYPFLDN SASLMFQQAH FPNSISQGNG QLLWGADDQR QKFINQSGLS NNFCSFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE653925 | 0.0 | HE653925.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-S gene), cultivar Samsun nn. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587187.1 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
TrEMBL | A0A1S4BZI7 | 0.0 | A0A1S4BZI7_TOBAC; LOW QUALITY PROTEIN: transcription factor bHLH137-like | ||||
STRING | XP_009587187.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4116 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-56 | bHLH family protein |