PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009586804.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 338aa    MW: 38227.8 Da    PI: 6.8014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009586804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  XP_009586804.1 129 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALKFKG 178
                     7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-33128187IPR001471AP2/ERF domain
CDDcd000185.53E-21129187No hitNo description
PROSITE profilePS5103225.014129186IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22129187IPR016177DNA-binding domain
SMARTSM003801.3E-38129192IPR001471AP2/ERF domain
PfamPF008473.1E-14129178IPR001471AP2/ERF domain
PRINTSPR003671.9E-11130141IPR001471AP2/ERF domain
PRINTSPR003671.9E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
FVCCFKLTIS KDITKVAIVD RRYGKRPFSA NESEEKVDNT NTTTTNTNEE EPIFPFYSAR  60
SQHDMSAMVS VLSQVIGNTN NNNNTTNISS VNSSVHGINP LTLTQSTGAN LQNQSQSIQE  120
QGNQQRKRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEAAALAYD EAALKFKGNK  180
AKLNFPERVQ GKTEFSFLTN TTQEFGIVGQ QFSATSSNNN NNNHNINLPY FQPNYLSQEH  240
FPNVHHYAQL LRDGNNFEMN FGVSPNFYQP ISEGFVSESL PNTSLALQQG TSHEQEQEVG  300
YNQKEEDFLR FPFHFGNSNS SAGPNTGESN WEDFERRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-27128189163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586804.20.0PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH542e-54EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1S4C4Y00.0A0A1S4C4Y0_TOBAC; ethylene-responsive transcription factor ERF113-like
STRINGXP_009586804.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.16e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]