PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016516150.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 670aa    MW: 73500.7 Da    PI: 9.0874
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016516150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07571620147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
   XP_016516150.1 571 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaNHRTYVDLKDKWKTL 620
                      6789999*******************9888878999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.78E-9378468IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.38566625IPR017930Myb domain
SMARTSM007171.9E-7570623IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10571621IPR009057Homeodomain-like
SuperFamilySSF466897.86E-16572653IPR009057Homeodomain-like
CDDcd116609.26E-18572622No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSARRMG IIRRKADGDG TCPFDLLATV AGKLLGEGES  60
SPDSTCSPRG KEQNAIVKDE KIKEKSYAEG CYERGFFISE LVSQAPVVNR SLSELPHAQN  120
DTISGPASVT MSSDCSEKLP FAKQFVNGET REEEHGVFSS CILDTESDKQ IKIELSNNAK  180
VSTTKGAAIS SSEFPDVWDK KPSTLLVTSD DSVKLSLSPY PAPCRAFPVI RNDVKLDNRD  240
DDENFGCTQP STPNKASGSA PRVRDRPIKK LLASKYWEEN LKSDNEGHAN TGGKTMHAYH  300
NRNSAHQRSQ RDFPFKKRKL FKCGSFSNSD GEMSTDGICS SPTSDLHGNA SGYSKASSGG  360
GAAAGTSVFN GGRASFKPSD SCVKFRIKSF RVPEFFVEIP ENATVGSLKR TVMEAVTAIL  420
GGGLRIGVVF QGKKVRDDNK TLLQTGISHD YELDALGFSL EPNPIQASPP LGPDWRSCVL  480
PCDTPQPLTR CLSPAITGIH QGRSDDHTGT SLNNFVESDR DSAPSPHYAA LEKISANSRA  540
LVPVTAVNAE ALAVVPLLKP KRSEATQRRI RRPFSVAEVE ALVQAVEKLG TGRWRDVKLR  600
AFDNANHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM  660
KHQSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-565596615107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309318QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-124HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016516150.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1S4DRU50.0A0A1S4DRU5_TOBAC; telomere repeat-binding protein 5-like isoform X1
STRINGXP_009764838.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-133TRF-like 2