PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515737.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 334aa    MW: 38204.8 Da    PI: 10.1955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16125214198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k ++ps+v    +l lpk+f++ h   +  ++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++  +  l+v 
  XP_016515737.1 125 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSHDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LKVY 211
                     889********************8884..345679***************888888....***********************997444..5888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016515737.1 212 IIR 214
                     877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-19117216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-22119216IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-22123214No hitNo description
PfamPF023621.5E-13125214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026125216IPR003340B3 DNA binding domain
SMARTSM010199.4E-19125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEDRNLISVK PVTKRWKEGQ QKVGHHKLKP TSYSSASTST QTHPSPKIKR VQLDRKNMVP  60
KKPRSVKSKA KRVKSNHPRK AESKLKGTNK RTRINDLYDD VEAKFSVMER AERILSSLAD  120
EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSHDTTVIL VDEWGNEYKT SYLLERNGLS  180
AGWRGFSMSH RLLKGDLLIF RLIEPCKLKV YIIRVNGRDV VDAALCLMNF DALKKSTDLD  240
LAQKDNRKRK KAKRLVEPFY VDFSKPKEYI QNDSHSAVDL NVSPSVHRSE TNSEVLDSEV  300
PEGSDVINRL QSNEICCSET SFLHDNPQKS ISCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-82HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755135e-82HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515737.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
TrEMBLA0A1S4DQN70.0A0A1S4DQN7_TOBAC; B3 domain-containing protein At5g42700-like isoform X2
STRINGXP_009612758.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein