PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 26188 Da PI: 9.4567 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.5e-16 | 130 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h k ++ +tl de+ ++e k+ k++ l++GW++F+ +++L +gD +vF+l+++++f +v XP_016515734.1 130 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFETKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLIESTKF--KVY 216 89*********************999423..4457***************666665....9***********************987777..888 PP EE- CS B3 96 vfr 98 ++r XP_016515734.1 217 IIR 219 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 121 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-24 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.33E-25 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 11.716 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-14 | 130 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-21 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVESKKKMLA YEESRLKRLE ENKKRMEELN LSKLVQAVRT ATSPKPSPMK KVKPRVRQEV 60 DRSAVRRSNR VADKPPPNYK EVPIEPLGKP RSYKRRDLLN RVYADDEDRQ YAIERAEQLQ 120 SEIDADFPSF VKPMLQSHVT GGFWLGLPVH FCNTHLPKRD EFVTLIDENE DEFETKYLAL 180 KRGLSGGWRG FAIDHELVDG DALVFQLIES TKFKVYIIRV NQAED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 2e-49 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612757.1 | 1e-166 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Refseq | XP_016515734.1 | 1e-166 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q1G3M3 | 1e-87 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1S4DRH5 | 1e-164 | A0A1S4DRH5_TOBAC; B3 domain-containing protein At3g19184-like | ||||
STRING | XP_009612757.1 | 1e-165 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 7e-86 | B3 family protein |
Publications ? help Back to Top | |||
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