PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515661.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 302aa    MW: 33110.2 Da    PI: 6.8681
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.2e-29168224158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k+rkpylheSRh+hAlrR+R+sgGrF
  XP_016515661.1 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKARKPYLHESRHQHALRRARASGGRF 224
                     69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.1E-32166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.8167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-25169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-23170192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-23201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPSNTKSANR EEPNAYNGPR SAVYSEPWWN STGYNPVSPG LTRGTASDSS SLEQSMDGQS  60
QSDGGINEEE EDAPEKSQSI IPLHADGSYG QADQNFQPAA PTIPPKLDGT LTQTQQLELV  120
GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPHEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELEKKQIKA RKPYLHESRH QHALRRARAS GGRFAKKTDA DASKGTGSVS  240
SSGSEPLQFN AADIQNRHEN GRLAELQHSY SNGSSYGNQS SFQESKDEYQ SAESREGGSS  300
GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17168232266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515661.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_016515662.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1S4DQG20.0A0A1S4DQG2_TOBAC; nuclear transcription factor Y subunit A-1-like
STRINGXP_009624416.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-56nuclear factor Y, subunit A1