PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016515263.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 383aa MW: 43679.3 Da PI: 6.8566

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016515263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.3	4.5e-12	117	195	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+++A+ GFsv k++s+k+ +++ t++C + ++ + ++ + +Cka+l ++++g w+++k+ ++HnH+l p XP_016515263.1 117 FYKKHARLRGFSVIKRNSNKKG-SDTARYITYCCDRTWIHKIKFTT----------KSNNCKARLATVLDDSGCWRISKVIHDHNHDLLP 195 9*************999985.5558999*99998887655..........7789*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-9	117	195	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.2E-12	276	341	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MDLNQENLAV QQNMNPNEHN TNTTTMNINQ DNSLNNVVHL DDDDEEADAS VHLDDDDEEA 60 GGKYHGEAND DEERVLGNEL ELCDVDREME NEFTKEDFVV GPISGMRFRD KDTLFAFYKK 120 HARLRGFSVI KRNSNKKGSD TARYITYCCD RTWIHKIKFT TKSNNCKARL ATVLDDSGCW 180 RISKVIHDHN HDLLPSVSRM MAGHRSGCDS LKRDLVAHDR SGIRPSKNIR LAEVQRGGPQ 240 NLGCTLKDCR NYILTTRNFE MKEGTHSRCS TFFVKSRQSI LLGCALMSHE DIDSYKLVFR 300 TWLDAMGNVH PDAIITGQCQ SIKVAIAEVI PNTIHSIWHI FSKLHVYLSG VRPSKIARAE 360 FKSMVLDSIT IKVLDRKWTE YIA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MDLNQENLAV QQNMNPNEHN TNTTTMNINQ DNSLNNVVHL DDDDEEADAS VHLDDDDEEA  60
GGKYHGEAND DEERVLGNEL ELCDVDREME NEFTKEDFVV GPISGMRFRD KDTLFAFYKK  120
HARLRGFSVI KRNSNKKGSD TARYITYCCD RTWIHKIKFT TKSNNCKARL ATVLDDSGCW  180
RISKVIHDHN HDLLPSVSRM MAGHRSGCDS LKRDLVAHDR SGIRPSKNIR LAEVQRGGPQ  240
NLGCTLKDCR NYILTTRNFE MKEGTHSRCS TFFVKSRQSI LLGCALMSHE DIDSYKLVFR  300
TWLDAMGNVH PDAIITGQCQ SIKVAIAEVI PNTIHSIWHI FSKLHVYLSG VRPSKIARAE  360
FKSMVLDSIT IKVLDRKWTE YIA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016515263.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like, partial
TrEMBL	A0A1S4DPB7	0.0	A0A1S4DPB7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009781959.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	6e-20	FAR1-related sequence 2