PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514516.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1090aa    MW: 122011 Da    PI: 6.5956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F +  ++
  XP_016514516.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DE 216
                     99*****************************954.5444.48************************************************4..46 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++++ r+
  XP_016514516.1 217 KSQLLLGIKRA 227
                     66678888765 PP
2Auxin_resp121.65.7e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gt++gv dldp+rW+ S+Wr+L+
  XP_016514516.1 252 AAHAAANNSPFSIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGVCDLDPIRWKSSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-43114255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-40118241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-17125226No hitNo description
SMARTSM010194.5E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97126228IPR003340B3 DNA binding domain
PfamPF023625.1E-20126227IPR003340B3 DNA binding domain
PfamPF065074.6E-35252334IPR010525Auxin response factor
PfamPF023096.6E-109541049IPR033389AUX/IAA domain
SuperFamilySSF542772.06E-99551041No hitNo description
PROSITE profilePS5174526.2839631047IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MKAPSNGYIA NSGEGDRKVM NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALI LSDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFSIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGVCDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPSFP GDESDIENAL KRGMPWISDE FGLKDAPSSI FPGLSLVQWM  420
SMQQNNHNPV AQSRLPNVLH SNIGTDDHSK LLSFQSPTPG LQFNKPNQLN QQFGQIQQPP  480
LAWPQQQQQS LQSPASVQQQ HTPQQHTLQQ QQHSLQQQPQ QHSRQQLPHQ HMLQQQQLQP  540
QPQLHQQAQQ QQRGPQQQQL TVNTPPVNNC VSPNQIPNQS FPQASIYAQQ QQLLSASNQS  600
QQNVPVNKNP FLSTSSAQDF PFQQQAEQQS NLLQKSQQQQ QIIPQQAPLQ LLQQSLMQRP  660
QVQTSSQQSL TEQQLQLQLL NKLQQQQQQQ AQQLSHVSST LEPRMPQQQQ NRQPQELQFG  720
HQQLSSNIMT TATHLQSPQH AFNQLEGQNK SPITIRALSG ATDGDAPSCS TSPSTNNFQV  780
SPQNFLTRNQ GQAILVDESV VDPSQEQNKS EFRMKHELPF SKSSEQSKYK GNGTENLEAA  840
SSTTSYGLDS SGFNFSLPAL CAEGDVQSHS RNNLPSAANI DGLTPDALLS RDYDSGKDMQ  900
NLFSPFGNTP RDIETELSAA GINSQQFGVP NMSYQPRCSN DLAVNDNGVL NNNSWTNQTQ  960
RMRTYTKVQK RGSVGRTIDV TRYKGYDELR HDLARMFGIE GQLEDPQRTE WKLVYVDHEN  1020
DMLLVGDDPW EEFVSCVQSV KILSSAEVQQ MSLDGDLGNV PVPNQASSGT DSGNAWRGHY  1080
DDNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711535545388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1215450.0EF121545.1 Solanum lycopersicum auxin response factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514516.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A1S4DM730.0A0A1S4DM73_TOBAC; Auxin response factor
STRINGXP_009791842.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19