PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016514113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 314aa MW: 34491.8 Da PI: 8.1718 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.5e-07 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++e++ fC+ ++ lCe C H+ H XP_016514113.1 4 QCDVCNKNEASVFCTADEAALCEACDHRVHHVnklaskH 42 7*************************9997323555555 PP | |||||||
2 | zf-B_box | 30.9 | 5.6e-10 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e +++lfC++++ lC++C l++Hk Ht XP_016514113.1 56 PLCDICQERRAILFCQQDRAILCRECDLSIHKAneHT 92 78*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.049 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.64E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.3E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 6.64E-5 | 50 | 92 | No hit | No description |
SMART | SM00336 | 4.1E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.495 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-8 | 56 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.89E-10 | 56 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKIQCDVCNK NEASVFCTAD EAALCEACDH RVHHVNKLAS KHQRFSLLQP SPKQFPLCDI 60 CQERRAILFC QQDRAILCRE CDLSIHKANE HTQKHNRYLL TGIKLSANSA LYSSTLSTSA 120 ASSANFSASS LKSQNPTNKP VAASVSSTIT SNTKAAAVEA VKVVKDKVSG CNSQLVNVGG 180 NNLTSSISEY LQMLPGWHVE DFLDCSTPNG SSKIGDEDML SFWDTDLESH MSSFPPQNVG 240 VWVPQAPPPL QSKQQAQTQF LSPSNLNFGG QIGIKDSREV NSIKSSRKWR DDNSFAVPQI 300 SPPSTTFKRS RTLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 3e-77 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514113.1 | 0.0 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 2e-84 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S4DL46 | 0.0 | A0A1S4DL46_TOBAC; B-box zinc finger protein 21-like | ||||
STRING | XP_009612483.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-76 | salt tolerance homolog2 |