PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513183.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 359aa    MW: 38205.6 Da    PI: 5.2611
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.7e-3790185398
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssgk 89 
                      +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++                + ++  + 
  XP_016513183.1  90 LAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngtlkiP-------TTSPATN- 176
                     689************************************************************77777444211111110.......1111111. PP

             TCP  90 aaksaaksk 98 
                     ++ ++a+++
  XP_016513183.1 177 SEGENATKR 185
                     111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3094175IPR005333Transcription factor, TCP
PROSITE profilePS5136927.34295149IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTITAVGQH VTDAERVVPS PPPSTDIVPL  60
LKEEPAENDL RGGTMSVGLN MQLQKVEKPL AKRSSKDRHT KVEGRGRRIR MPAACAARIF  120
QLTRELGHKS DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGTLKIPT TSPATNSEGE  180
NATKRRKRAA NSEFYDVHEP SNFAPVAPIA PQSLLPVWAV ASGNGLVPTT SGTTFFMVQP  240
PPTSTTTIAT AGPSYPPQLW ATPIYNIPGR PISNYVSGIS YAGVSAAAEG QVSSSKSDGN  300
VSAMAPSSSS TGVTTTTTTS TTTTQMLRDF SLEIYDKREL QFMVGSGSSE NDQTSSSKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-36HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513183.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT898e-71TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1S4DIG80.0A0A1S4DIG8_TOBAC; transcription factor TCP19-like
STRINGXP_009780060.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.27e-68TCP family protein