PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512853.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 270aa    MW: 31465.5 Da    PI: 9.4159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.5e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
   XP_016512853.1 20 KGPWTAEEDRLLIEYVKLHGEGRWSSVASVAGLKRNAKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding34.26e-1180117847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++l+++++ ++G++ W+ Ia+ ++ gRt +++k++w+++
   XP_016512853.1  80 AEKLILELHVRWGNR-WAIIAKNLP-GRTYNEIKNYWRTH 117
                      5899***********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9421571IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-231670IPR009057Homeodomain-like
SuperFamilySSF466896.64E-2817114IPR009057Homeodomain-like
SMARTSM007171.7E-171969IPR001005SANT/Myb domain
PfamPF002491.3E-172067IPR001005SANT/Myb domain
CDDcd001671.58E-122267No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1971121IPR009057Homeodomain-like
SMARTSM007171.4E-972120IPR001005SANT/Myb domain
PROSITE profilePS5129415.14772122IPR017930Myb domain
PfamPF002491.3E-981117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
LWGVMSEEIC SRGMTKGWRK GPWTAEEDRL LIEYVKLHGE GRWSSVASVA GLKRNAKSCR  60
LRWVNYLRPD LKKGQITSHA EKLILELHVR WGNRWAIIAK NLPGRTYNEI KNYWRTHFKK  120
KTQNFRDKSE KIKSRFLKSQ KFKQHHHQQS NTETDINSVV SHNDKKNYYA SILNKLGNRI  180
ASLPNENVNK IPTLPQGNQE MDILYPNIAD QEQDDDFFYS ILNDHIPVPV LESSSNEDIM  240
WDGLWNLDDF QCNFSATTYD TSLAIPSLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-242012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512853.10.0PREDICTED: myb-related protein 340-like, partial
TrEMBLA0A1S4DHK90.0A0A1S4DHK9_TOBAC; myb-related protein 340-like
STRINGXP_009795299.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-68myb domain protein 305