PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016512398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 33689.1 Da PI: 6.2786 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.3 | 2.5e-36 | 4 | 58 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ XP_016512398.1 4 TCPRCGSINTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 58 7**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 2 | 48 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.481 | 3 | 57 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-31 | 4 | 57 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 5 | 41 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAPTCPRCGS INTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG GCRKSRRGKS 60 SSSSIRSSST DHHHGLISRN LGRGINNIDQ STTSLVQGGD HHGPSIDLAL VYANFLNNSS 120 KPQPEDHHQH LELPELLPND HHQAVVVGPS FEFSDMINME FASDLGQETR LSDGDGVYFS 180 GIDEKQQTMQ HVMNHNDDLH YTNMNMNANI INSELGNYMQ LPPLPCEELE VSSEGVAWSN 240 SHDINMVFTN NDILINTSHS STGGLEPEPE PEILAAQDPS HHHAHANDRS LFSLSNFGNI 300 FRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512398.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A1S4DGA4 | 0.0 | A0A1S4DGA4_TOBAC; dof zinc finger protein DOF2.1-like | ||||
STRING | XP_009601936.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12963 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 8e-33 | Dof family protein |