PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512039.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 691aa    MW: 79770.9 Da    PI: 6.9575
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.6e-2470161190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  XP_016512039.1  70 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 161
                     69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2270161IPR004330FAR1 DNA binding domain
PfamPF105513.0E-24293385IPR018289MULE transposase domain
PROSITE profilePS509669.78565600IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5573596IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAAKPLNNIW IRRQQCPCGD WKCYIKADGD DQAVYVSLTT KSETASSSSQ DAVFTPYVGQ  60
IFKSDDEAFE YYSNFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEI VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVQPGH LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLFELLEA CKASQQKDEG FIYSFTTDDN GRVENIAWSY GHSLRAYSFF GDVMTFDTTY  300
RSITYNMVLG VLFGIDNNGN AIFLGCVLLQ DETSQSFSWA LQSFVRFMRG KQPETIVTDI  360
DSGLRDAIAS EMPNTKHVIC LWQVLSKLSS WFSLPLGLQY PDFKSEFDML CRLENVEDFE  420
HQWNHLVARF GVGSDKHIAL LLSYRTSWPI SYTRNFFLAR TMTIEYWKLI ETFMKNILSP  480
QSSLLLFFEQ VGLASNFGNH NKEKRLYMPA KTCLPLEEHA RSVLTPYAFN VMQHEIMLSM  540
QYAITEMANS SYLARHYKKM EAECLVIWIP EDEEVHCSCK EFEHSGILCR HSIRMLVSKN  600
YFQIPAKYFP LRWRLESSLA PPDESVIQSS SSEYSQVFHA LSGSLYSESL ISKQRVNYVN  660
RELKKLLENV QNMPTVDEIA VSSAPINVRE L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512038.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016512039.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S4DFC20.0A0A1S4DFC2_TOBAC; Uncharacterized protein
STRINGXP_009776059.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]