PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016511669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 581aa MW: 64663.5 Da PI: 6.4025 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.2 | 3.2e-27 | 318 | 372 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+g+t+++v+SHLQkYR++ XP_016511669.1 318 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGITRHNVASHLQKYRMH 372 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 28.6 | 7e-11 | 21 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + ++ +r+ lek +y +v ++ + eal + +k +++ ++ + ++dG+ l+ +++++ +lp i+ + + +++ +++ +G XP_016511669.1 21 VLLLDEDCNSASEMRSRLEKLDY-IVYSFCNENEALSAISNKSedFHVAIVEVTAGNSDGV--LQFLESAK-DLPTIMTSNIHSLSTMMKCIALG 111 7899999999*************.***************666556***************5..66676666.9*******9999*********** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl K + ++l + XP_016511669.1 112 AVEFLQKSLSDDKLKN 127 **********999976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-15 | 17 | 150 | No hit | No description |
SuperFamily | SSF52172 | 3.84E-14 | 17 | 136 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 0.0059 | 19 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 19.691 | 20 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.9E-8 | 21 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.30E-8 | 22 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 315 | 375 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.363 | 315 | 374 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-18 | 316 | 374 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 318 | 372 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-7 | 321 | 370 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 581 aa Download sequence Send to blast |
MICTEDDQLL GWKDFPKGLK VLLLDEDCNS ASEMRSRLEK LDYIVYSFCN ENEALSAISN 60 KSEDFHVAIV EVTAGNSDGV LQFLESAKDL PTIMTSNIHS LSTMMKCIAL GAVEFLQKSL 120 SDDKLKNIWQ HVVRKASNAG EKDVPESLKP VKESLVSVPQ LQPVKSAAGD KSSNETEPFT 180 TVPGNNNEHS SGCDKYPAPS TPQLKHGVRS VDDGDCQEHT IFSTEQDSGE HDGDAKSVET 240 TFNNTVAEST VQTSPREQQG QTIVKEENGS SPHQKMEADI ATSSPSNNCP DNRTSHSAEP 300 SKASAPHSSS GTKTNKKKMK VDWSPELHKK FVQAVEQLGI DQAIPSRILE LMKVEGITRH 360 NVASHLQKYR MHRRQILPKE VERKWPHPQP RDSVQRGCYP HHTPIMTFPP YHCNHVPAAG 420 QLYPAWVPPA SYPNGLQVWG SPYYPAWQPA DSWHWNPHPG NFELEEYEAE NSCFVIMQLH 480 ADTWGSPVMP PSLGSYPPYP QNGGVYRPNG MQNRYSMLEK SFDLHPAEEV IDKVVKEAIT 540 KPWLPLPLGL KRPSTESVLR ELSRQGISTV PPQINGSRGR S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-16 | 323 | 372 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511668.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_016511669.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_016511670.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_016511671.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
TrEMBL | A0A1S4DEL4 | 0.0 | A0A1S4DEL4_TOBAC; two-component response regulator-like APRR2 isoform X1 | ||||
STRING | XP_009784214.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-125 | ARR-B family protein |