PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 564aa MW: 63020 Da PI: 6.5091 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.5 | 2.7e-27 | 319 | 373 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR++ XP_016510577.1 319 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNIASHLQKYRMH 373 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 33.2 | 2.6e-12 | 21 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl++d++ + ++++r+ lek +y +v ++ + eal + +k+ +++ ++ + ++dG+ l+ +++++ +lp i+ + + +++ +++ +G XP_016510577.1 21 VLLIDEDCNSASVMRSRLEKMDY-IVYSFCNENEALSAISTKTeyFHVAIVEVTAGNSDGV--LRFLESAK-DLPTIMTSNIHSLSTMMKCIALG 111 89*********************.***************777777***************5..77777766.9*******9999*********** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++l + XP_016510577.1 112 AVEFLQKPLLDDKLKN 127 ********98888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.13E-16 | 17 | 138 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-17 | 17 | 155 | No hit | No description |
SMART | SM00448 | 0.0058 | 19 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 21.57 | 20 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.2E-9 | 21 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.45E-9 | 22 | 132 | No hit | No description |
PROSITE profile | PS51294 | 14.921 | 316 | 375 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.97E-18 | 317 | 375 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-27 | 317 | 376 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-25 | 319 | 373 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-8 | 322 | 371 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MICTEDDQLL GWKDFPKGLK VLLIDEDCNS ASVMRSRLEK MDYIVYSFCN ENEALSAIST 60 KTEYFHVAIV EVTAGNSDGV LRFLESAKDL PTIMTSNIHS LSTMMKCIAL GAVEFLQKPL 120 LDDKLKNIWQ HVVRKQAFNA GEKDVPESLK PIKESLVSMP QLQPVKSAAD DKSSNETEPF 180 TSIPENNNEH SSGCDKYPAP STPQLKQGVR SVDDGDCQDH TIFSTEQGSG EHDGDTKSVE 240 TIFNNTVAEA TVQTSPPEQQ GQTILKEENG SSPHQKMEAD IATSSPSNDC CDNSSSHSAE 300 PIKASGRHSS GGTRSNKKKM KVDWSPELHK KFVQAVEQLG IDQAIPSRIL ELMKVEGLTR 360 HNIASHLQKY RMHRRQILPK EVERRWPHPQ PRDSVQRSYY PLHRPIMTVP PYHSNHIPAA 420 GQLYPAWVPP ASYPNGLQVW GSPYYPAWQP ADSWHWKPHP GLHADTWGSP VMPPSFGSYP 480 PYPQNGEVYQ PNGMQNRYSM LEKSFDLHPA EEVIDKVVKE AITKPWLPLP LGLKPPSTDS 540 VLHELSRQGI STVPPQINGS RCWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-16 | 324 | 373 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510575.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_016510576.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_016510577.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-126 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1S4DAY6 | 0.0 | A0A1S4DAY6_TOBAC; two-component response regulator-like APRR2 isoform X1 | ||||
STRING | XP_009595442.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-128 | ARR-B family protein |
Publications ? help Back to Top | |||
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