PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510576.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 564aa    MW: 63020 Da    PI: 6.5091
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-27319373156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++++SHLQkYR++
  XP_016510576.1 319 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNIASHLQKYRMH 373
                     5689*****************.********************************96 PP
2Response_reg33.22.6e-12211271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl++d++ + ++++r+ lek +y +v ++ +  eal  + +k+  +++ ++ +   ++dG+  l+ +++++ +lp i+ +   + +++ +++ +G
  XP_016510576.1  21 VLLIDEDCNSASVMRSRLEKMDY-IVYSFCNENEALSAISTKTeyFHVAIVEVTAGNSDGV--LRFLESAK-DLPTIMTSNIHSLSTMMKCIALG 111
                     89*********************.***************777777***************5..77777766.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp   ++l +
  XP_016510576.1 112 AVEFLQKPLLDDKLKN 127
                     ********98888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-1617138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-1717155No hitNo description
SMARTSM004480.005819129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.5720133IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-921127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.45E-922132No hitNo description
PROSITE profilePS5129414.921316375IPR017930Myb domain
SuperFamilySSF466897.97E-18317375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27317376IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-25319373IPR006447Myb domain, plants
PfamPF002498.8E-8322371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MICTEDDQLL GWKDFPKGLK VLLIDEDCNS ASVMRSRLEK MDYIVYSFCN ENEALSAIST  60
KTEYFHVAIV EVTAGNSDGV LRFLESAKDL PTIMTSNIHS LSTMMKCIAL GAVEFLQKPL  120
LDDKLKNIWQ HVVRKQAFNA GEKDVPESLK PIKESLVSMP QLQPVKSAAD DKSSNETEPF  180
TSIPENNNEH SSGCDKYPAP STPQLKQGVR SVDDGDCQDH TIFSTEQGSG EHDGDTKSVE  240
TIFNNTVAEA TVQTSPPEQQ GQTILKEENG SSPHQKMEAD IATSSPSNDC CDNSSSHSAE  300
PIKASGRHSS GGTRSNKKKM KVDWSPELHK KFVQAVEQLG IDQAIPSRIL ELMKVEGLTR  360
HNIASHLQKY RMHRRQILPK EVERRWPHPQ PRDSVQRSYY PLHRPIMTVP PYHSNHIPAA  420
GQLYPAWVPP ASYPNGLQVW GSPYYPAWQP ADSWHWKPHP GLHADTWGSP VMPPSFGSYP  480
PYPQNGEVYQ PNGMQNRYSM LEKSFDLHPA EEVIDKVVKE AITKPWLPLP LGLKPPSTDS  540
VLHELSRQGI STVPPQINGS RCWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16324373655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510575.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_016510576.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_016510577.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-126APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S4DAY60.0A0A1S4DAY6_TOBAC; two-component response regulator-like APRR2 isoform X1
STRINGXP_009595442.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-128ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]