PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016510400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 166aa MW: 18495.1 Da PI: 10.3206 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.1e-14 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky XP_016510400.1 68 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 112 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.92E-17 | 62 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 63 | 117 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.6E-19 | 66 | 115 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.4E-7 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-12 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-9 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MVSVYPTPPA GQDFYYMGDP MKMGLPGLHS IQSGSNGASS HGNSNSGLVV PDDHNKKTRK 60 PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG 120 TSEHVPPPRP KRKAAHPYPQ KAPKKVLSQV GSIQFQPPGA LPEPGF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX141625 | 1e-127 | JX141625.1 Cestrum nocturnum MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617756.2 | 1e-119 | PREDICTED: protein REVEILLE 6 isoform X2 | ||||
Refseq | XP_016510400.1 | 1e-120 | PREDICTED: protein REVEILLE 3-like, partial | ||||
Swissprot | Q6R0H0 | 9e-61 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A1S4DAC9 | 1e-119 | A0A1S4DAC9_TOBAC; protein REVEILLE 3-like | ||||
STRING | XP_009617756.1 | 1e-118 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01520.1 | 2e-47 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|