PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509870.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 32204.8 Da PI: 4.6083

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	7e-21	64	117	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k XP_016509870.1 64 KKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 117 5678*************************************************9 PP
2	HD-ZIP_I/II	133.4	8.1e-43	63	154	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktk lE+dy++Lk++yd+l ++ ++++k++e+L++e+ XP_016509870.1 63 EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDQLKSSYDSLLSDFDSIRKDNEKLKAEVV 154 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-20	50	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.366	59	119	IPR001356	Homeobox domain
SMART	SM00389	5.7E-20	62	123	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-18	64	117	IPR001356	Homeobox domain
CDD	cd00086	2.63E-19	64	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-22	65	126	IPR009057	Homeodomain-like
PRINTS	PR00031	4.3E-6	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.3E-6	99	115	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	119	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGSGHIFFDP SCHGNMLFLG NSDPVFRGPR SMMKMEDSSK RRPFFSSPEE LYDEEYYDEQ 60 SPEKKRRLTP EQVHLLEKSF EAENKLEPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKT 120 LERDYDQLKS SYDSLLSDFD SIRKDNEKLK AEVVSLMEKL QGKVVGEAGV INEKCEVLEV 180 DALTLQVKVK AEDRLSSGSG GSAVVDEHSP QLVDSGDSYF HTGHMEEYPL GAGGCNNIPP 240 PMDGLQSEED DGSDDGGGHG YFCNVFVAAE EQQHEEGEPI GWFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ808758	0.0	KJ808758.1 Nicotiana tabacum homeodomain leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622827.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5
Refseq	XP_016509870.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
Swissprot	Q02283	3e-92	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A1S4D8T6	0.0	A0A1S4D8T6_TOBAC; homeobox-leucine zipper protein HAT5-like
STRING	XP_009622827.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7891	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-79	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]