PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509506.1
Common NameJAF13b
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 622aa    MW: 69630.4 Da    PI: 5.6702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13437480755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  XP_016509506.1 437 ISERRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 480
                     78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-5215202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.923430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12433484No hitNo description
SuperFamilySSF474596.8E-16434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16435491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10437480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAMGHQDQDG VPNNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLEWSDGY YNGDIKTRKT  60
VQVGEVNEDQ LGLHRTEQLR ELYSSLLTGE GEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQTV VCFPYLGGVI  180
ELGVTELVLE DPNLIQQIKN SFEVDHSVIS KRPNYNSNDA KDDMNVASRK LDHNVLESDA  240
YPVEINNSSP HDSSNGFVAN QEAEDSLMVV GVIGETSQAQ SWKFVDDNMS NGVHNSLNSS  300
DCISQNYEKL SPLSSGEKET KPCPIDREEH NQNKLHLLDH QGDDAQYQAV ISKLLKSSDQ  360
LTLGPHFRNI NKKSSFAGWK NDTEAPRIGT AQKLLKKVLL EVPRMHGGVT HKFSRENRKK  420
NGLWRPEVDD IDRSRVISER RRREKINERF MHLASMLPTG GKVDKISLLD ETIEYMKELE  480
RRVQELEARS GKKTNDTAEQ TSDNCGTSKF NDVNGSLKRK ACDMDEMEPE SCNELLKGSS  540
ADGIVISMID KEVSIKMRCL WSEGLLLKIM EALTDLQMDC HTVQSSKIDG ILSIAIESKS  600
NGLKTVSVGA IREVLQRVVW KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-191620512195Transcription factor MYC3
4rqw_B6e-191620512195Transcription factor MYC3
4rs9_A6e-191620512195Transcription factor MYC3
4yz6_A6e-191620512195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438443ERRRRE
2439444RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3057690.0KF305769.1 Nicotiana tabacum cultivar SamsunNN JAF13-like protein (JAF13b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779730.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_016509506.10.0PREDICTED: transcription factor EGL1-like
TrEMBLA0A1S4D8230.0A0A1S4D823_TOBAC; transcription factor EGL1-like
TrEMBLA0A1U7WZT60.0A0A1U7WZT6_NICSY; transcription factor EGL1-like isoform X1
STRINGXP_009779730.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-175bHLH family protein