PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509054.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 310aa    MW: 35433.6 Da    PI: 9.6093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-1849138199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++  + + ks  l++p +f+++++++  ++ + tl+ +sg  W+vkl      ++ ++ +GW++F k+n++++g+f+vF++dg+ +f  +v+
  XP_016509054.1  49 FFKIF--NPTVKSE-LRIPAHFLRHISED--SPDKATLKCLSGGIWNVKL--HIDEDGLLIHQGWEKFHKDNHIEDGEFLVFRYDGDLQF--TVR 134
                     77777..5555555.9*******999766..5668***************..999999**************************998777..9** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_016509054.1 135 IFSK 138
                     9997 PP
2B373.23.1e-23207300199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++ +v+ks+ +++pk+f+e+ ++  ++++t +l +++g++W+v++    ++g + + +GWk+Fvk+n+LkegD++vF+l++  + el+v+
  XP_016509054.1 207 FVKCLKSYNVNKSCFIYVPKSFCEQLSEL-ANKTTAILSNSEGNKWKVNF--VLRKGYHAFCGGWKQFVKDNKLKEGDVCVFQLVN--TNELKVS 296
                     899999999**************999444.35579***************..55555688999********************987..55569*9 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf++
  XP_016509054.1 297 VFDN 300
                     9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2145139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.49346139IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-2147140IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-1648137No hitNo description
SMARTSM010192.0E-1649139IPR003340B3 DNA binding domain
PfamPF023621.2E-1549139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-27201299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-26202299IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-24205299No hitNo description
PROSITE profilePS5086316.257207301IPR003340B3 DNA binding domain
SMARTSM010192.6E-19207301IPR003340B3 DNA binding domain
PfamPF023622.7E-21207300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MHVVRERAGL LQTINAIKDV GVNCHTIRNL NSNNNAENAS KKIDRRAIFF KIFNPTVKSE  60
LRIPAHFLRH ISEDSPDKAT LKCLSGGIWN VKLHIDEDGL LIHQGWEKFH KDNHIEDGEF  120
LVFRYDGDLQ FTVRIFSKNG LEREAKSITM DKNQKASISD TFKNQKRPPK YPYNPMDVEN  180
GTEHETPRKK VAAEKAKLFL TSDTPQFVKC LKSYNVNKSC FIYVPKSFCE QLSELANKTT  240
AILSNSEGNK WKVNFVLRKG YHAFCGGWKQ FVKDNKLKEG DVCVFQLVNT NELKVSVFDN  300
PPESLLKVAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769346.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
RefseqXP_016509054.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1S4D6X20.0A0A1S4D6X2_TOBAC; B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1U7VWM00.0A0A1U7VWM0_NICSY; B3 domain-containing protein Os11g0197600-like
STRINGXP_009769346.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein