PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508279.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 406aa    MW: 43005.2 Da    PI: 7.1814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.12.5e-20302364163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l +++
  XP_016508279.1 302 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRAELSRLRSEHDQLAAQN 364
                     89*******************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.8E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.1E-52137269No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-18295363No hitNo description
SMARTSM003381.9E-21302366IPR004827Basic-leucine zipper domain
PfamPF001701.5E-18302364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.438304367IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11305361No hitNo description
CDDcd147021.38E-23307358No hitNo description
PROSITE patternPS000360309324IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGSSDIDKSS KEAKESKEAK TPNSQEQASS TATGTVNPEW SGYQGYSPMP PHGFLASGPQ  60
AHPYMWGVQH LMPPYGTPPH PYVAMYPHGG IYAHPSIPPG SYPFSPFAMP SPNGIAEATV  120
NTSGNAEVDG KSSEGKEKLP IKRSKGSLGS LNMITGKNNE PGKTSGASAN GAYSKSAESG  180
SEGSSEGSDA NSQNESPMKS AGRQDSAEAS QNGNSAHSSQ NGGTSAPHSL INQTMPIMPM  240
SAAGGIPGPT TNLNIGMDYW SVAASSSMPA IHGKVPSASV AGGMVTAGSR DIVQSQMWIQ  300
DERELKRQRR KQSNRESARR SRLRKQAECD ELAQRAEALK EENASLRAEL SRLRSEHDQL  360
AAQNASLKER LGEVPGREDP RPSRNDIHLG KDTQHSSQTE PTEGGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324RRSRLRK
2318325RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139800.0BT013980.1 Lycopersicon esculentum clone 133025R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508279.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_016508280.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1S4D4A90.0A0A1S4D4A9_TOBAC; bZIP transcription factor 16-like
STRINGSolyc08g076100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-151basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]