PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507884.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 372aa    MW: 43537.4 Da    PI: 6.1408
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix712.2e-2299180179
        trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                     +Wt+++v++Li+a+++++e++ ++    kk++W+++s++m+e g ++sp+qC++k+++lnk++k+++++ +++t + ++++ 
  XP_016507884.1  99 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAESGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCCVVENP 180
                     7*******************99876569*******************************************99535555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.1E-2197211No hitNo description
PROSITE profilePS500906.20297158IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MQVNHQQSDS PNQGSGDLQH ALEGAASFGF SNMHDMNQQV LSLDAIETSR LDVYEAYNER  60
SDDVEEVTVR REEKPPVVYR RTRWKMNKEK QPVVYSRMKW TDEMVKLLIT AVSYIGEDVW  120
SNGIFPKKGK WRAISNAMAE SGHHVSPQQC EDKFNDLNKK FKRLNDILGR GTACCVVENP  180
GLMEMMDLTH DAQEEVKKLL SSKQLFYQEL CSYNNQNRLF LPDDRELQRS VLLALKRKDR  240
YEPEYVVQDM SAKRKIVGEE RVSNVVCAFI NSDCNVLNPN SNGIHDYTNN EEAETLQNEQ  300
QIMHQLLQLE EQKLQIKAQI LELEKQRVKC LRFRRREDRE LQELKLENKA MMLENKRMEL  360
QLKRCETSLQ TE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507884.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507885.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507886.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507887.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507888.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507889.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
RefseqXP_016507890.10.0PREDICTED: uncharacterized protein LOC107825526 isoform X2
TrEMBLA0A1S4D3790.0A0A1S4D379_TOBAC; uncharacterized protein LOC107825526 isoform X2
STRINGXP_009798603.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-66