PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 390aa MW: 45678.9 Da PI: 6.3298 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.9 | 2.4e-22 | 117 | 198 | 1 | 79 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 +Wt+++v++Li+a+++++e++ ++ kk++W+++s++m+e g ++sp+qC++k+++lnk++k+++++ +++t + ++++ XP_016507882.1 117 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAESGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCCVVENP 198 7*******************99876569*******************************************99535555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.202 | 115 | 176 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.6E-21 | 115 | 229 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MLNPSVYQLT FCCFCFRSMQ VNHQQSDSPN QGSGDLQHAL EGAASFGFSN MHDMNQQVLS 60 LDAIETSRLD VYEAYNERSD DVEEVTVRRE EKPPVVYRRT RWKMNKEKQP VVYSRMKWTD 120 EMVKLLITAV SYIGEDVWSN GIFPKKGKWR AISNAMAESG HHVSPQQCED KFNDLNKKFK 180 RLNDILGRGT ACCVVENPGL MEMMDLTHDA QEEVKKLLSS KQLFYQELCS YNNQNRLFLP 240 DDRELQRSVL LALKRKDRYE PEYVVQDMSA KRKIVGEERV SNVVCAFINS DCNVLNPNSN 300 GIHDYTNNEE AETLQNEQQI MHQLLQLEEQ KLQIKAQILE LEKQRVKCLR FRRREDRELQ 360 ELKLENKAMM LENKRMELQL KRCETSLQTE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507875.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507876.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507877.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507879.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507880.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507881.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507882.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
Refseq | XP_016507883.1 | 0.0 | PREDICTED: uncharacterized protein LOC107825526 isoform X1 | ||||
TrEMBL | A0A1S4D391 | 0.0 | A0A1S4D391_TOBAC; uncharacterized protein LOC107825526 isoform X1 | ||||
STRING | XP_009798603.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 2e-66 |