PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016507781.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 224aa MW: 24384.7 Da PI: 9.0101

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.2e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+s XP_016507781.1 16 EQEHLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGTLRNIPVGGGSRKNTKRS 76 57899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	9	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MQDPSIYTQI KPQFPEQEHL KCPRCDSPNT KFCYYNNYNL SQPRHFCKSC RRYWTKGGTL 60 RNIPVGGGSR KNTKRSSSSS KKISSSTTSS LVSSSKPDQI TNPKPEPFGL PAIPAFDQNS 120 SRVIDMSNGQ FSSLLESNGP QFGNLMEALN PSNNNGSNLQ LGEFARNQNS NSGLGLGSGS 180 DGTRQNGNHT YLGIQNGGDS DNCWNGGSNG WPDLAIYTPG SNFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790601.1	1e-163	PREDICTED: dof zinc finger protein DOF3.1-like
Refseq	XP_016507781.1	1e-163	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	1e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A1S4D323	1e-162	A0A1S4D323_TOBAC; dof zinc finger protein DOF3.1-like
TrEMBL	A0A1U7XLW0	1e-162	A0A1U7XLW0_NICSY; dof zinc finger protein DOF3.1-like
STRING	XP_009790601.1	1e-163	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-37	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]