PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27131.9 Da PI: 9.5446 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+s+ XP_016507439.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP | |||||||
2 | K-box | 76.1 | 9.1e-26 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +qqe++ L+++++ Lq+++R+l+Ge+L L +k+L +Le+qLe sl+ iR K+++l+++i+el +k ++++en +L kk+ XP_016507439.1 80 HNPVSELKLWQQEAEILRQQLQDLQENHRQLMGEELCGLGVKDLTNLENQLEISLRGIRMEKEQILKDEIQELTQKGSMIHQENLELYKKV 170 356678899*******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.80E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.409 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSNT 60 SMKSVIERYN KTKDERQQLH NPVSELKLWQ QEAEILRQQL QDLQENHRQL MGEELCGLGV 120 KDLTNLENQL EISLRGIRME KEQILKDEIQ ELTQKGSMIH QENLELYKKV NLIRQENAEL 180 YKKAYGTRNA NTVNGNTNSP YRFIVSREVH ASIHLQLSQP EPHNFETPAG VSNSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215377 | 3e-61 | AC215377.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0073P13, complete sequence. | |||
GenBank | HG975441 | 3e-61 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 3e-61 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507439.1 | 1e-173 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 1e-108 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S4D2D7 | 1e-172 | A0A1S4D2D7_TOBAC; MADS-box transcription factor 23-like isoform X1 | ||||
STRING | XP_009623629.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-107 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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