PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016506527.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 194aa MW: 23032.8 Da PI: 4.3636

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016506527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97	2.8e-30	8	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf F+Ptdeel ++yLk kv+g ++ + i+++d +++P++L++k+ +++++yfFs+ + +nr+t++gyWk+ d+++l XP_016506527.1 8 LPPGFSFDPTDEELFMYYLKSKVAGLPFYPSINIPHLDFSSSHPSELNEKALWSKNQLYFFSQVK--------ENRTTRKGYWKEVHMDEPILLP 94 79***********************888788**********977777889*9974........589999**********99 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk +v+y + p+ ++t+W+m+e++l XP_016506527.1 95 dyGEKIVGIKKYFVYY--NIPE-VQTNWIMEEFHL 126 888999******..5666.79******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-36	6	151	IPR003441	NAC domain
PROSITE profile	PS51005	35.17	8	153	IPR003441	NAC domain
Pfam	PF02365	2.3E-21	9	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDERVDLPP GFSFDPTDEE LFMYYLKSKV AGLPFYPSIN IPHLDFSSSH PSELNEKALW 60 SKNQLYFFSQ VKENRTTRKG YWKEVHMDEP ILLPDYGEKI VGIKKYFVYY NIPEVQTNWI 120 MEEFHLSISN SFKKPTKKRE NEMEWVLCRV HESNNQSQGI NCLYRNCDDE VELSALDEVF 180 LSMDDEEEEE ISFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	5	158	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	5	158	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	5	158	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	5	158	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	5	158	17	173	NAC domain-containing protein 19
3swm_B	2e-21	5	158	17	173	NAC domain-containing protein 19
3swm_C	2e-21	5	158	17	173	NAC domain-containing protein 19
3swm_D	2e-21	5	158	17	173	NAC domain-containing protein 19
3swp_A	2e-21	5	158	17	173	NAC domain-containing protein 19
3swp_B	2e-21	5	158	17	173	NAC domain-containing protein 19
3swp_C	2e-21	5	158	17	173	NAC domain-containing protein 19
3swp_D	2e-21	5	158	17	173	NAC domain-containing protein 19
4dul_A	2e-21	5	158	14	170	NAC domain-containing protein 19
4dul_B	2e-21	5	158	14	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016506527.1	1e-143	PREDICTED: NAC domain-containing protein 104-like
TrEMBL	A0A1S4CZF9	1e-141	A0A1S4CZF9_TOBAC; NAC domain-containing protein 104-like
STRING	XP_009625611.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13785	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-39	xylem NAC domain 1