PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016505589.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 343aa    MW: 37612.7 Da    PI: 5.9349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016505589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09187234455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  XP_016505589.1 187 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 234
                     8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.50E-10181238No hitNo description
PROSITE profilePS5088814.634183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESTQVRSAS CGGKAGETAT GFHQISQSII MPVPMEAAGN SFTALLELPP NQALDLLVHS  60
DEMGSAKLSL PDTHNKTYYS SPLIDRASAG EFAREFSVFA AGNSPENGSF PSNPQFVKQE  120
PDDSDSNPNS SPEFSNPTFD QKTTKRKERQ KKGKESSSKK SKKSANDTSE KLPYVHVRAA  180
RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA MVLDEIINHV QSLQRQVEFL  240
SMRLAAVNPR VDFNLDSLFA AENGSAVDSN FAGIVAPSIW PEGQTSGNRN QYQQLLQIDG  300
FNQPVWVREE DNSSFITPEN SLLTYDSSSN SASLHQNQLK MEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780308.10.0PREDICTED: transcription factor bHLH48-like isoform X2
RefseqXP_016505589.10.0PREDICTED: transcription factor bHLH48-like isoform X2
TrEMBLA0A1S4CX420.0A0A1S4CX42_TOBAC; transcription factor bHLH48-like isoform X2
TrEMBLA0A1U7WP000.0A0A1U7WP00_NICSY; transcription factor bHLH48-like isoform X2
STRINGXP_009780303.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-74bHLH family protein