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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_016504967.1 | ||||||||
| Common Name | REV | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 839aa MW: 92059.7 Da PI: 6.1516 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.4 | 2.5e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
XP_016504967.1 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
56789****************************************************97 PP
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| 2 | START | 156.2 | 2.7e-49 | 164 | 371 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.EEEEEEE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.galqlmv 95
+aee+++e+++ka+ ++ Wv ++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d+ W ++++ +e+ s g g+++l +
XP_016504967.1 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRSSWFRDCRNVEVFTMFSAGnGTIELLY 257
7899******************************************************.6667777776************************** PP
EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ + p+ s++vRa++lpSg+li+p+++g+s +++v+h +l++++ +++lr+l++
XP_016504967.1 258 TQIYAPTTLAPaRDFWTLRYTTTLENGSFVVCERSLSGTGAGPNaasASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYE 352
****************************************999999999********************************************** PP
HHHHHHHHHHHHHTXXXXX CS
START 187 sglaegaktwvatlqrqce 205
s+ + ++k++ a+l++ ++
XP_016504967.1 353 SSKVVAQKMTIAALRYARQ 371
**************99875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 15.418 | 20 | 84 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.8E-16 | 21 | 86 | IPR009057 | Homeodomain-like |
| SMART | SM00389 | 1.0E-15 | 22 | 88 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 4.76E-16 | 25 | 85 | No hit | No description |
| Pfam | PF00046 | 6.6E-16 | 26 | 83 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
| CDD | cd14686 | 4.85E-6 | 77 | 116 | No hit | No description |
| PROSITE profile | PS50848 | 27.519 | 154 | 381 | IPR002913 | START domain |
| CDD | cd08875 | 5.26E-70 | 158 | 373 | No hit | No description |
| SuperFamily | SSF55961 | 8.52E-34 | 163 | 374 | No hit | No description |
| Gene3D | G3DSA:3.30.530.20 | 7.2E-20 | 163 | 366 | IPR023393 | START-like domain |
| SMART | SM00234 | 3.9E-39 | 163 | 372 | IPR002913 | START domain |
| Pfam | PF01852 | 1.3E-46 | 164 | 371 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 4.4E-5 | 402 | 494 | No hit | No description |
| SuperFamily | SSF55961 | 4.4E-5 | 525 | 591 | No hit | No description |
| Pfam | PF08670 | 9.1E-48 | 695 | 838 | IPR013978 | MEKHLA |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 839 aa Download sequence Send to blast |
MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC 120 ENGFMRQQLH TASAATTDVS CESVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA 180 VDWVPMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKIAEILKDR SSWFRDCRNV 240 EVFTMFSAGN GTIELLYTQI YAPTTLAPAR DFWTLRYTTT LENGSFVVCE RSLSGTGAGP 300 NAASASQFVR AQMLPSGYLI RPCDGGGSII HIVDHLNLEA WSAPEILRPL YESSKVVAQK 360 MTIAALRYAR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFS DDGWSLLSSD 420 GGEDVIVAVN SRKNIATTSV PLSPLGGILC AKASMLLQNV PPAVLVRFLR EHRSEWADFN 480 VDAYVASSMK SCSYAYPGVR PTRFTGSQII MPLGHTIEHE EMLEVIRLEG HSIGQEDAFM 540 PRDIHLLQMC SGTDENAVGA CSELVFAAID EMFPDDAPLL PSGFRIIPLE SKSSDPQDTS 600 NAHRTLDLAS SLEVGPATNP ATGDVVSGYS ARSVLTIAFQ FPFEDNLQDN VATMARQYVR 660 SVVSSVQRVA MAISPAGVNS TFGSKLSPGS PEAVTLSHWI CQSYSYHMGT ELLQADSRGD 720 ESVLKNLWQH QDAILCCSLK SLPVFIFANK AGLDMLETTL VALQDITLDR IFDESGRKVL 780 FAEFPKIMDQ GFAYLPGGIC MSAMGRHISY EQAIAWKVFA SEETSVHCLA FSFINWSFV |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JQ686937 | 0.0 | JQ686937.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein revoulta (REV) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016504967.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
| Refseq | XP_016504968.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
| Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
| TrEMBL | A0A1S4CV39 | 0.0 | A0A1S4CV39_TOBAC; homeobox-leucine zipper protein REVOLUTA-like | ||||
| STRING | XP_009624234.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA457 | 24 | 140 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60690.1 | 0.0 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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