PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503380.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 276aa MW: 31621.2 Da PI: 5.1608

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2e-26	106	155	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl XP_016503380.1 106 RMLSRETISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 155 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	90	176	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	108	155	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MVLFAGGRVL DSQQQLLFVL DTVLFVIYFP PVDVQQIYFP PTSSAGELYY GDLGNGFGLS 60 DELGSGNNQL LLCDKNQEII ITNDHVEEIK KKEKDSRQIE EINSTRMLSR ETISKYFYMP 120 ITQAAKELNI GLTLLKKRCR ELGIRRWPHR KLMSLQTLIK NVKELEKGGG SGMEQKLKDV 180 IKLLEEEKKM LEEVPDMELE EKTKRLRQAC FKANYKRRKL MSMTELQASF GSYCNSNPAV 240 GIGYGHREEE DDDYDDEEIK SLLADCFSSS SPTLHE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503380.1	0.0	PREDICTED: protein RKD2-like
TrEMBL	A0A1S4CQN1	0.0	A0A1S4CQN1_TOBAC; protein RKD2-like
STRING	XP_009778708.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-50	RWP-RK domain-containing protein