PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502437.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 342aa    MW: 38776.1 Da    PI: 4.2808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1953106356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_016502437.1  53 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 106
                     56689************************************************9 PP
2HD-ZIP_I/II1309.7e-4252143192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk++ e+L++++e+L +e+ 
  XP_016502437.1  52 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKSNFDALKHNYESLKHDNEALLKEIL 143
                     69*************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1943110IPR009057Homeodomain-like
PROSITE profilePS5007117.49148108IPR001356Homeobox domain
SMARTSM003896.1E-1851112IPR001356Homeobox domain
CDDcd000861.55E-1653109No hitNo description
PfamPF000464.1E-1653106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2055115IPR009057Homeodomain-like
PRINTSPR000311.0E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.0E-588104IPR000047Helix-turn-helix motif
PfamPF021831.4E-17108148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKRPCSSDSL GALMSMCPNT TDEQNHVYST RDFQSMLLDE EGCIEESGHI SEKKRRLSVE  60
QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGVLKSN  120
FDALKHNYES LKHDNEALLK EILELKSKVY TENGESKGVA VKEEAMESES DDNKVIEQSK  180
PNDNDNNNNN FLENFEEDDE EEEINFENFN VAAAATSTNI FGDNFKDGSS DSDSSAILNE  240
DNSPNAAAIS SSGAFLISTN GNGNGNGSST SLNFCFQFTE SSSKSNLGDG QKGNNNYYQP  300
QQYVKMEEHN FFNGEESCST LFTDEQAPTL QWYCPEDWNW KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1016100.0AY101610.1 Nicotiana tabacum homeodomain protein Hfi22 (Hfi22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777009.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_016502437.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4CMF70.0A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U7WQP60.0A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_009777009.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-65homeobox protein 6