PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016501753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 528aa MW: 58612.8 Da PI: 8.0822 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_016501753.1 59 KGGWTPEEDDSLKRAVAVFRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_016501753.1 111 KGPWTREEDDKIIELVAKYGPMKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************99**********.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.2 | 3.8e-18 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_016501753.1 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.968 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-14 | 56 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-15 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-18 | 61 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.54E-12 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 31.737 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-31 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-17 | 110 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.96E-15 | 113 | 157 | No hit | No description |
Pfam | PF13921 | 1.2E-17 | 114 | 174 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 115 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.595 | 162 | 212 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-18 | 162 | 210 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-13 | 165 | 208 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 165 | 212 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MAELKVEDCC TENKQSAAAS NSSVSENSAS VTLRSPTVSS PTPTSPTHRR TSGPIRRAKG 60 GWTPEEDDSL KRAVAVFRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTREEDD 120 KIIELVAKYG PMKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLRK KLDFYLATGN LPPATRDGLQ NGCKDTTETA 240 KAEELLAASS GTADMCKIEN GWQVAEISAS NGGPQTDSTD SEVVRLEAQS PEIDAIRHIQ 300 PSTESENMYE GRRINSVVDR LKVVEAPFRC EIPACGTLYY EPPTSESCIP LDSDLLNIRW 360 AQCESDASPS PSPNGFFTPP STKSSSLYAQ TPESVLKIAA RSFPNTPSIL RKRKTQAKLS 420 TPTNKMGKSD GDFCKDKPID ACEEILPRNS SNGIGLYNSQ AFNASPPYRL RSRRTSIFKS 480 VEKQLEFTLD NEKHDISNGI SESTVNDISH AAKDCSQSAK KDTDKKVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-70 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-70 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501753.1 | 0.0 | PREDICTED: myb-related protein B-like | ||||
Swissprot | Q6R032 | 1e-149 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A1S4CKM8 | 0.0 | A0A1S4CKM8_TOBAC; myb-related protein B-like | ||||
STRING | XP_009596030.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-134 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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