PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016501486.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 721aa MW: 83444.8 Da PI: 7.6857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016501486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.6e-22	110	193	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l XP_016501486.1 110 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHLL 193 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-19	110	193	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-26	312	405	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.841	599	635	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	610	637	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.3E-4	611	631	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MLPESFHDPT VSCEATPPNP FRRNSVMEEA SLDSELDLTG QGSGRLQEIE SDGLDDQNSE 60 QIESDELFSQ NGGQIESDGL DDQNGFTDGQ KQFIAPAVGM EFESYDDAYN YYNCYAREVG 120 FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMM RMRMVDSKRW 180 RVLEVTLEHN HLLGAKAYKS IKKTGAGNKK KLDSSCDAEV RTIKLYRALV IDAGANRNAN 240 FSARRCKTSS DCHDKLNLRK GDTQAMYNYF CRMQLTNPNF FYLMDLNDEG QLRNVFWVDA 300 RSRAAYAYFI DVIYFDNSYL SNKYEIPLVA FVGTNHHDQS VLLGCGLLAG ETQASYVWVF 360 KAWLTCSLGR FPQTIITERC KILESAISEV FPRSSHRVAL SHIMRKVPEK LGGLRNYDAI 420 RKALIKTIYE ALKPFDFEAS WRFMIQRFGV GDHEWLLSLY DDRTKWAPVY LKDTFFAGMA 480 TARSNETLTA FFDKYLHKQT PLKEFLDKYE LALQKKYKEE AVADTESRNS NPELKTRCSF 540 ELQLAKVYTR EIFKRFQLEV EEMYSCFSTT QLHVDGQMVI FLVKERVLGE GNRREIRDYE 600 VLYNRAAAEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK DYKRLCASDL 660 ESSYTESTEH VQWFSQLYRS ALQVVEEGVI SPDLYKVALN AFEESLTRVH HIEEKLNKKS 720 L

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MLPESFHDPT VSCEATPPNP FRRNSVMEEA SLDSELDLTG QGSGRLQEIE SDGLDDQNSE  60
QIESDELFSQ NGGQIESDGL DDQNGFTDGQ KQFIAPAVGM EFESYDDAYN YYNCYAREVG  120
FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMM RMRMVDSKRW  180
RVLEVTLEHN HLLGAKAYKS IKKTGAGNKK KLDSSCDAEV RTIKLYRALV IDAGANRNAN  240
FSARRCKTSS DCHDKLNLRK GDTQAMYNYF CRMQLTNPNF FYLMDLNDEG QLRNVFWVDA  300
RSRAAYAYFI DVIYFDNSYL SNKYEIPLVA FVGTNHHDQS VLLGCGLLAG ETQASYVWVF  360
KAWLTCSLGR FPQTIITERC KILESAISEV FPRSSHRVAL SHIMRKVPEK LGGLRNYDAI  420
RKALIKTIYE ALKPFDFEAS WRFMIQRFGV GDHEWLLSLY DDRTKWAPVY LKDTFFAGMA  480
TARSNETLTA FFDKYLHKQT PLKEFLDKYE LALQKKYKEE AVADTESRNS NPELKTRCSF  540
ELQLAKVYTR EIFKRFQLEV EEMYSCFSTT QLHVDGQMVI FLVKERVLGE GNRREIRDYE  600
VLYNRAAAEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK DYKRLCASDL  660
ESSYTESTEH VQWFSQLYRS ALQVVEEGVI SPDLYKVALN AFEESLTRVH HIEEKLNKKS  720
L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016501486.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S4CKF0	0.0	A0A1S4CKF0_TOBAC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_009620425.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]