PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016501009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 165aa MW: 19209.8 Da PI: 6.0478 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.6e-16 | 16 | 93 | 9 | 98 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k++ l +p f+ ++ g ++ + + + g++W vk+ ++++ l++GW++F+++++L+ gD++vF+++g++ef +v +f+ XP_016501009.1 16 PGFKHA-LNIPLGFL-KYlTGHEH---EHAVLKRAGKKWLVKV--NGHR----LEEGWEKFAEEHDLQLGDMLVFRHEGNMEF--KVVIFD 93 455555.9*******.66554533...4577889*********..7777....*************************99999..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-22 | 5 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.449 | 7 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-21 | 7 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.91E-17 | 8 | 93 | No hit | No description |
SMART | SM01019 | 9.0E-15 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 18 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKVPPVKPHF FKPIQPGFKH ALNIPLGFLK YLTGHEHEHA VLKRAGKKWL VKVNGHRLEE 60 GWEKFAEEHD LQLGDMLVFR HEGNMEFKVV IFDSGHCKRE YAENLQEEEE EKEEEEEEEA 120 GGGGRGGEEK RKNEEEKRNK EKKLILVNLF LNAQLDPIGF PTVTW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 143 | RKNEEEKRNKEKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501009.1 | 1e-115 | PREDICTED: B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A1S4CJ21 | 1e-113 | A0A1S4CJ21_TOBAC; B3 domain-containing protein REM9-like | ||||
STRING | XP_009614318.1 | 9e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 9e-19 | B3 family protein |