PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500166.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 425aa    MW: 48071.4 Da    PI: 7.6814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12256302354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er+RR+++N++f  Lr+++P+       K++ a+ L  Av YI++L
  XP_016500166.1 256 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDRASLLADAVTYINEL 302
                     589************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-3810162IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.06E-17252316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.59253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9256302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-13256307No hitNo description
Gene3DG3DSA:4.10.280.108.3E-17257312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEDITSTNTL QKHLQYIIHS SQEWWVYAIF WQASKDANGR LIFSWGDGHF RGTKDLSNLA  60
KVGTTKVDNN ISDTELFYMV SVPKYFVADN ELIVRAYNPT SYIWLNNYHE LQLYNYDRAK  120
EAHLHGIRTL VCIPTPSGVV ELGSSEIIQE NWDLVRLSRS LFGLSNKNIN TSSPINHQDL  180
SSFNFVSLGE NQKVENDSPQ ATDAKLRQET VIGNISLGNS DSFENESSTI NNIINRPIKR  240
ERKAGSSRTT GTEMAKNHVE AERQRREKLN NRFYALRSVV PNVSKMDRAS LLADAVTYIN  300
ELKAKVEELE SNKILPQKPK GQCATNSVQS VPSTVVNRAN NSFEMEVEVK IIGLEAMVRV  360
RSPDMNYPCA RLMNVLRELE LQVNHASVSS VKNLMLQDVV LRVPNEVANE EVLKSVILKR  420
LSVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-2581627192Transcription factor MYC3
4rqw_B7e-2581627192Transcription factor MYC3
4rs9_A7e-2581627192Transcription factor MYC3
4yz6_A7e-2581627192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500166.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S4CGB90.0A0A1S4CGB9_TOBAC; transcription factor MYC2-like
STRINGXP_009590627.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-67bHLH family protein