PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500109.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 688aa    MW: 77009.8 Da    PI: 9.3322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07584633147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_016500109.1 584 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFecaDHRTYVDVKDKWKTL 633
                      6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.35E-6387470IPR029071Ubiquitin-related domain
PROSITE profilePS500539.591391461IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.907.8E-4394461No hitNo description
CDDcd017690.00593395461No hitNo description
PROSITE profilePS5129416.891579638IPR017930Myb domain
SMARTSM007172.7E-7583636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-9584634IPR009057Homeodomain-like
SuperFamilySSF466896.06E-15585666IPR009057Homeodomain-like
CDDcd116601.69E-14585635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MSSKKRLNYG FSGCQFPVIP KAPRSVRRRH SHNNLDNDQI CAFELLAAVA GELLQESESS  60
ACSNVAEGKG ELAECRVGVK CEQLKEDKPV KSECFSQGSC VESTYIPEPA ALEQNFKHSL  120
DKPNHVENNI FHRHNCSIMN SDFSQKDWSC AKLENCKKVD RGGKFHTEVE GGSSNLENAC  180
NKKIETVTQK QLDDDRKQTD DLTVANSCSV KGPIEKHVNN NAAINSDNSV QFPLYRVVPK  240
PSFGKQRNNV KLGIRDDDEN SFRSYSHSSK IRAFRKTSRI GYRRIKKILT SRHWRIAPQL  300
KDCERSCFNN RVKSFYQNRK RICALERCRV DIPSKRRKLS HYNSAVAYGQ QASSERKSNS  360
HEKGIKRDII PHRGSGASAS AKTHQKKDPC VKFSIKSFNI PELFIEVPET ETVGSLKRSV  420
MEAVKSILGN GLRVGVVLEG KKVRDDNRTL QQAGVSQNGN LDTLGFTLEP SFYPVSPSLL  480
SKDPPASSPC VADHELTRRP PSPILELELP SDSSDPSKTK LDKHDEDYHE LAQSPTNPID  540
PTSNVAIPDF RAVVIVPHLN AEALAVVPGS PKNSRSELSQ RRTRRPFSVA EVEALVEAVE  600
QLGTGRWRDV KIRAFECADH RTYVDVKDKW KTLVHTASIT PQQRRGEPVP QELLDRVLAA  660
HAYWSQQHGK QHAEALKMAD SQVQNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-645686881121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337RKRICALERCRVDIPSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607614.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_009607681.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_016500108.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_016500109.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1S4CG430.0A0A1S4CG43_TOBAC; telomere repeat-binding protein 4-like
STRINGXP_009607614.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-95TRF-like 2