PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016500042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 340aa MW: 38529.9 Da PI: 4.4833 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k XP_016500042.1 60 KKRRLRVDQVKALEKNFEVENKLDPERKVKLAQELGLQPRQVAIWFQNRRARWK 113 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.1e-41 | 59 | 150 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl +qvk+LE++Fe e+kL+perKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +e+ XP_016500042.1 59 EKKRRLRVDQVKALEKNFEVENKLDPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLQHDNEALLKEIC 150 69*************************************************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.74E-19 | 50 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-16 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.78E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.9E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.9E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-16 | 115 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MKRVRSSDSL GVPLMSMCQN TTDDHHQWNS QVYSRDFQSM LELGLDEEAC VEESGHGSEK 60 KRRLRVDQVK ALEKNFEVEN KLDPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD 120 YNVLKANFDS LKHNYESLQH DNEALLKEIC ELKSKQNGGN NESKADVKEE AIESETDDKY 180 IDQSKPNNST TLGNCEDDST ELNFESFNGG NGTINDSNIF ADFKDGSSDS DSSAILNEEN 240 SPNYAAISSS GAFLISNNGG SNSSSSNSSL NCFQFFDSNP KAILGDAKDK VFCNNQPQFV 300 KMEEHNFFSS EESCSTLFAD EQAPTLHWYC PEDWNNWKDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 9e-90 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588928.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_016500042.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1S4CFT4 | 0.0 | A0A1S4CFT4_TOBAC; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_009588928.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 6e-66 | homeobox protein 6 |