PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 456aa MW: 50675.8 Da PI: 6.5586 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 148 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_016499635.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.7 | 2.8e-13 | 240 | 289 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k XP_016499635.1 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 289 89********.7******5553..2.26**********99**********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-9 | 148 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 148 | 206 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.24E-11 | 148 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-17 | 149 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 149 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 149 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-17 | 240 | 300 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.0E-9 | 240 | 288 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-23 | 240 | 300 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-16 | 241 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-30 | 241 | 304 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.172 | 241 | 298 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-6 | 242 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-6 | 280 | 300 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MFDLNLGFEE FAMDDDTVHV SYDTATSEKL RELQLENSGT SNSSIVNVET SSTAGDDDFF 60 SCSDDRRRND GFAFDILRGN DYEESEFVTK ELFPLTGGES AAAELLSPQQ WLDLSANYGG 120 PAEQRIVVVP QQRQQVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180 AHAAARAYDR AAIKFRGLDA DINFNVADYH DDLKQMSNFT KEEFVHILRR QSTGFSRGSS 240 KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCSG KEAVTNFELS 300 TYEGELSTQD DGGASHNLDL NLGIASSSLA DEQHGNTCQM HSPSTTMGSK LPHRRQPLTD 360 RPLLWNGVNT SVFPTFKGTA IGKGMEVDSS PNWARQDQHP YGGSPSVPLF STAASSGFAN 420 STSAAAHQHH FSTGSLPYHH SPSLANMNFA HYYCRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF132002 | 0.0 | AF132002.1 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499635.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | Q8H443 | 1e-100 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A1S4CEQ0 | 0.0 | A0A1S4CEQ0_TOBAC; floral homeotic protein APETALA 2-like isoform X1 | ||||
STRING | XP_009769089.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-100 | related to AP2.7 |
Publications ? help Back to Top | |||
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