PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499436.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 299aa    MW: 33073.2 Da    PI: 7.6482
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.4e-07442537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++++e++ fC+ ++  lCe C    H+       H
  XP_016499436.1  4 QCDVCNKNEASVFCTADEAALCEACDHRVHHVnklaskH 42
                    7*************************9997323555555 PP
2zf-B_box30.11e-095692438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    + C+ ++e +++lfC++++  lC++C l++Hk   Ht
  XP_016499436.1 56 PLCDICQERRAILFCQQDRAILCRECDLSIHKVneHT 92
                    78*****************************656665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.049147IPR000315B-box-type zinc finger
CDDcd000211.59E-7347No hitNo description
PfamPF006431.1E-5443IPR000315B-box-type zinc finger
SMARTSM003365.3E-7447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.49553100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1453100IPR000315B-box-type zinc finger
PfamPF006434.1E-85692IPR000315B-box-type zinc finger
CDDcd000211.78E-105692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKIQCDVCNK NEASVFCTAD EAALCEACDH RVHHVNKLAS KHQRFSLLQP STKQFPLCDI  60
CQERRAILFC QQDRAILCRE CDLSIHKVNE HTQKHNRYLL TGIKLSANSA LYSSIPSPSA  120
ASSANSSASS FKSQNPTNKP AAVEAVTVVK EKVGGCNSQL VNVGGNNLTS SISEYLEMLP  180
GWHVEDFLDC STPNGSSKIG DEDMLSFWDT DLESHMSSFP PQNIGVWVPQ APSPLQSKQQ  240
IQIQFLSPSN LNFGGQIGIK DSREVNSIKS SRKWRDDNSF AVPQISPPST SFKRSRTLW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-79HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787732.10.0PREDICTED: probable salt tolerance-like protein At1g75540
RefseqXP_016499436.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ71e-84BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A1S4CE930.0A0A1S4CE93_TOBAC; B-box zinc finger protein 21-like
TrEMBLA0A1U7X6K10.0A0A1U7X6K1_NICSY; probable salt tolerance-like protein At1g75540
STRINGXP_009787732.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.14e-80salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]