PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499085.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 520aa MW: 60673 Da PI: 8.1393

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.9	1.4e-17	21	113	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +Y ++Ak++GFs+r+++ s ++ + i++r++vC + +++++k +++++r r++ r++C+ak+ v ke w v +++ HnHel XP_016499085.1 21 CYVNFAKQIGFSTRRDRYFGSaEHPTGIYRRDYVCHRARSPRPQKVVEKERQRDRKSPRCNCNAKMCVAKEIingVTCWIVVYFDNVHNHELL 113 7*************99988666677**************99999999************998855678***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-15	21	113	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-10	235	310	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MGNSDLYKGK VFNSDDEAYN CYVNFAKQIG FSTRRDRYFG SAEHPTGIYR RDYVCHRARS 60 PRPQKVVEKE RQRDRKSPRC NCNAKMCVAK EIINGVTCWI VVYFDNVHNH ELLNHKEVKF 120 LPAYRNIDII DQKRILLLAK AGCSMSLIRR VLELEKGVDV GQLFFTEKDI RNFVQSQSST 180 NIEYDALELL KICKSLKDKD VDFQYDFTVD ACQRLENIIW TFGDSIRAYE IFGNVVVFYT 240 TYRLNRYEMP LGVWVGASNH GNTIFFGCSF LWLMNGKHPQ TILTDQDLGL IEAIKLPLTK 300 HAFCIWHITS KFSTWFSFVL GSRYLQFKYE FRRLYEIGSI EEFECQWKKL ITKFDLESDR 360 HIKLLYVNRA SWALPYLKGY FFAGMTTTGR SESINAYLKR FLHARTSLKE FVEQDEMILS 420 VEYGLFSNSD GSYIVRHYDK TDGRRFVYWN PLEETFYLST NAHNYFMLPE KYLLAGWRSR 480 RELRLAAENP IDTIGNVASS AYDNSDTYDG SSADDGSGVP

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MGNSDLYKGK VFNSDDEAYN CYVNFAKQIG FSTRRDRYFG SAEHPTGIYR RDYVCHRARS  60
PRPQKVVEKE RQRDRKSPRC NCNAKMCVAK EIINGVTCWI VVYFDNVHNH ELLNHKEVKF  120
LPAYRNIDII DQKRILLLAK AGCSMSLIRR VLELEKGVDV GQLFFTEKDI RNFVQSQSST  180
NIEYDALELL KICKSLKDKD VDFQYDFTVD ACQRLENIIW TFGDSIRAYE IFGNVVVFYT  240
TYRLNRYEMP LGVWVGASNH GNTIFFGCSF LWLMNGKHPQ TILTDQDLGL IEAIKLPLTK  300
HAFCIWHITS KFSTWFSFVL GSRYLQFKYE FRRLYEIGSI EEFECQWKKL ITKFDLESDR  360
HIKLLYVNRA SWALPYLKGY FFAGMTTTGR SESINAYLKR FLHARTSLKE FVEQDEMILS  420
VEYGLFSNSD GSYIVRHYDK TDGRRFVYWN PLEETFYLST NAHNYFMLPE KYLLAGWRSR  480
RELRLAAENP IDTIGNVASS AYDNSDTYDG SSADDGSGVP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499085.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A1S4CD64	0.0	A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_008803488.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-144	FAR1-related sequence 11